Hello, I have a project that I have to do and so far I have done most of it, but I need the last step and I do not have time. The project is: I have a fasta file with dna sequences and a pattern that match in certain places. I need to reverse complementary sequences and to print the output like:
for every match on the original sequence I need to indicate the start and the end of the match, and if the nucleotide matches the sequence I need to print "." instead of the nucleotide. Else, print the nucleotide.
If the match is on the complementary sequence I need to do the same steps and print the motif under the sequence. Contact me if you think that you can do it. I think that it is not so complicated, but I do not have time to finish it and that's why I need additional help.