Parsing and File Merging project (can be done in Perl or Python) - involves DNA sequence data

Looking for quick, immediate assistance with a perl/python coding project. Some knowledge of bioinformatics (or DNA sequence data) is preferred but not required.

Pleas read all instructions thoroughly and be able to work through today (bid to picked within 2 hours) and will run through project completion:

1. First, you will extract records from a file that contains blast output. The records with minimum scores have been extracted are included in this file:

[url removed, login to view]

From the file, you will extract all information for the records as long as the

"queary starts at = " value does not exceed 70 OR if the query end value is 70 bases LESS than the "quesry length = "

2. This information can be merged with a file containing an what we call an annotation for that sequence. The sequence has an identifier we call an amplicon name. The matching file for that sequence is labeled with the identifier and available in the folder test_output

3. Finally, we move the output into a file formatting exactly the same as [url removed, login to view]

Some final checks will be employed after the records have been entered with all of their details and then the project is complete.

Much more explanation will be available. The coding is not difficult, just requires good attention to detail.

Again, this is for immediate work - bid to be selected within ~ 2 hours. Please do not

Habilidades: Instalação de Script, Shell Script

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( 148 comentários ) United States

ID do Projeto: #3049109

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